Deploy BacSearch in a Java Web Server (like Apache Tomcat). After the deployment, remove the .war file from the webapps folder (if the file is still there) and follow the instructions in the own configuration file (rnas.properties) of the application. Finished, start the server, open your browser and it will be ready to be used with Genbank accessing the address http://server:port/bacsearch, generally http://localhost:8080/bacsearch.
BacSearch needs a recent version of Java (Recommended Version 6 Update 26 ).
http://www.java.com/en/download/manual.jsp
Name | Size | |
---|---|---|
RDP-II - 10.26 |
Archae |
Large |
RDP-II - 10.26 |
Bacteria |
Large |
RDP-II - 10.26 |
Archae and Bacteria |
Large |
RDP-II - 10.26 |
Genbank Combined |
Large |
FUNGENE - fusA |
DNA FASTA |
Small |
FUNGENE - ileS |
DNA FASTA |
Small |
FUNGENE - lepA |
DNA FASTA |
Small |
FUNGENE - leuS |
DNA FASTA |
Small |
FUNGENE - pyrG |
DNA FASTA |
Small |
FUNGENE - recA |
DNA FASTA |
Small |
FUNGENE - recG |
DNA FASTA |
Small |
FUNGENE - rp1B |
DNA FASTA |
Small |
FUNGENE - rpoB |
DNA FASTA |
Small |
Greengenes ARB Database |
ARB 16S |
233MB |
Greengenes Fasta data files: |
Fasta data files |
Varied |
Greengenes Format: |
greengenes16SrRNAgenes.txt.gz |
945M |
SILVA SSU |
SSU - REF |
285MB |
SILVA SSU |
HSM/MVM |
194MB |
SILVA SSU |
REF NR |
226MB |
SILVA SSU |
PARC |
992MB |
SILVA LSU |
REF |
45MB |
SILVA LSU |
PARC |
107MB |